OrchidBase 6.0
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Orchid Genome
Phalaenopsis equestris
Dendrobium catenatum
Apostasia shenzhenica
Platanthera guangdongensis
Platanthera zijinensis
Cymbidium sinense
Cymbidium ensifolium
Cymbidium goeringii
Transcriptome
Phalaenopsis equestris
Dendrobium catenatum
Apostasia shenzhenica
Platanthera guangdongensis
Platanthera zijinensis
Cymbidium sinense
Cymbidium ensifolium
Cymbidium goeringii
Tools
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Enhanced Sequence Search
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[CDS OR Scaffold]
Program Option
Program name:
EXPECT threshold:
# of Alignment:
blastn
tblastx
tblastn
10.0
1.0
0.001
0.0000001
200
250
300
350
Alignment View:
Database:
Pairwise
all_species_cds
all_species_Scaffold
Scoring Parameters
Match/Mismatch Scores
GapOpen/GapExtend
Filter
1
2
4
/
-1
-2
-3
-4
-5
-1
-2
-3
-4
-5
/
-1
-2
-3
Low complexity regions
Enter Query Sequence:
BLAST result
Expression Profile
Selected ID
Gene expression
Heatmap
Expression pattern
PCA
Cluster
contig
TPM
FPKM
colorbar length value:
min value :
max value:
figure size:
default
select value
0
-10
(10, 10)
(7,5)
(2,1)
row cluster:
colorbar position:
color map:
True
False
(0.02, 0.8, 0.05, 0.18)
(0, .2, .03, .4)
mako
vlag
hot
Greens
YlGnBu
Purples
Greys
reflash
reset