OrchidBase 6.0
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Orchid Genome
Phalaenopsis equestris
Dendrobium catenatum
Apostasia shenzhenica
Platanthera guangdongensis
Platanthera zijinensis
Cymbidium sinense
Cymbidium ensifolium
Cymbidium goeringii
Transcriptome
Phalaenopsis equestris
Dendrobium catenatum
Apostasia shenzhenica
Platanthera guangdongensis
Platanthera zijinensis
Cymbidium sinense
Cymbidium ensifolium
Cymbidium goeringii
Tools
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Enhanced Sequence Search
back
[PEP OR Scaffold]
Program Option
Program name:
EXPECT threshold:
# of Alignment:
blastp
blastx
10.0
1.0
0.001
0.0000001
200
250
300
350
Alignment View:
Database:
GapOpen/GapExtend
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML Blast output
tabular
abular with comment lines
Text ASN.1
Binary ASN.1
Comma-separated values
all_species_pep
-1
-2
-3
-4
-5
-11
/
-1
-2
-3
Enter Query Sequence:
BLAST result
Expression Profile
Selected ID
Gene expression
Heatmap
Expression pattern
PCA
Cluster
contig
TPM
FPKM
colorbar length value:
min value :
max value:
figure size:
default
select value
0
-10
(10, 10)
(7,5)
(2,1)
row cluster:
colorbar position:
color map:
True
False
(0.02, 0.8, 0.05, 0.18)
(0, .2, .03, .4)
mako
vlag
hot
Greens
YlGnBu
Purples
Greys
reflash
reset