OrchidBase 5.0
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About OrchidBase
Orchid in Wikipedia
Development and Goals
Database Statistics
Characteristics of orchid species
Contact
Orchid Genome
Phalaenopsis equestris
Dendrobium catenatum
Apostasia shenzhenica
Platanthera guangdongensis
Platanthera zijinensis
Transcriptome
Phalaenopsis Transcriptome
Orchidaceae Floral Transcriptome
Tools
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Program Option
Program name:
EXPECT threshold:
# of Alignment:
blastn
tblastx
tblastn
10.0
1.0
0.1
0.01
0.001
0.0001
0.00001
0.000001
0.0000001
200
250
300
350
Alignment View:
Database:
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML Blast output
tabular
abular with comment lines
Text ASN.1
Binary ASN.1
Comma-separated values
Phalaenopsis_cds
Phalaenopsis_Scaffold
Scoring Parameters
Match/Mismatch Scores
GapOpen/GapExtend
Filter
1
2
4
/
-1
-2
-3
-4
-5
-1
-2
-3
-4
-5
/
-1
-2
-3
Low complexity regions
Enter Query Sequence: